Adds analysis/pd_sep_paper_section/ as the home for the "PD separation is net negative under agentic workloads" paper section: plot scripts for C1 (workload chars), C6 (roofline), C7 (routing-vs-PD-sep lever), the C6/C7 PDFs already rendered, and a README mapping candidate claims to required figures plus open re-run items. Removes --enforce-eager from bench.sh and all active launch scripts so cuda graphs are captured -- the prior methodology suppressed one of PD-sep's structural advantages (D-node fixed-shape decode). Legacy scripts under scripts/legacy/ are intentionally untouched as historical records. Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
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