Key finding: at 16 concurrent sessions (2 per GPU), TPOT p90 degrades from 0.073 to 0.106 (+45%), with MEDIUM TPOT at 0.197 (+149%). This is the first time we've reproduced real prefill-decode interference in controlled experiments. Elastic RDMA at 16 sessions doesn't help: only 13/500 offloaded (cache-gate correct for cold turn-1), kv_both adds ~16% TPOT overhead at high concurrency. Load scaling: 1000req_ts20, 200req_ts10, 200req_ts5, 500req_ts10 all show ~30% GPU util at 8 sessions. The bottleneck is max_inflight_sessions, not arrival rate. Updated elastic_hypotheses.md with H8, H9, and comprehensive final analysis. The real bottleneck is vLLM's chunked prefill scheduling, not routing or PD disaggregation. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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Elastic Prefill Service: Hypotheses and Validation Log
Date: 2026-05-23 Context: Investigating whether elastic PD disaggregation can improve agentic LLM serving vs pure co-located baseline.
Baseline Reference (8C plain, fresh restart, 200 req)
OK=198/200 TTFT50=1.075 TTFT90=9.384 TPOT90=0.0761 E2E50=5.075
WARM: TTFT50=0.137 TPOT90=0.061
MEDIUM: TTFT50=0.921 TPOT90=0.079
HEAVY: TTFT50=4.945 TPOT90=0.076
H1: Mooncake kv_both has significant runtime overhead
Claim: Enabling kv_both mode degrades TPOT even without KV transfer (RDMA threads, ZMQ sockets compete for CPU).
Prior evidence: Earlier elastic P2P experiment showed MEDIUM TPOT 0.079→0.197 (+150%). Attributed to kv_both overhead.
Experiment: Phase 0A (7C kv_both, no offload) vs Phase 0B (7C plain)
Result: TPOT90 = 0.0738 (kv_both) vs 0.0729 (plain) → +1.3%, within noise
Verdict: REJECTED. kv_both has zero runtime overhead. The earlier 150% TPOT degradation was from offload-induced interference, not kv_both itself.
H2: Dedicated Prefill Service (PS) without KV pull improves HEAVY TTFT
Claim: A dedicated PS instance (no sessions) does HEAVY prefill without disrupting C's decode. PS does full cold prefill (no cache), D (session-sticky C) pulls KV and decodes.
Experiment: PS V1 — 1PS + 7C kv_both, always offload HEAVY to PS
Result:
ps_always: OK=195/200, HEAVY TTFT p50=~7.8s (baseline 5.0s, +56%), cascading timeoutsps_cost: 0 offloads (cost model correctly identifies PS is more expensive)ps_flexd: OK=172/186 (92.5%), HEAVY TTFT p50=7.8s, 12 ReadTimeout
Root cause: PS has no KV cache for the session → full cold prefill is SLOWER than C's cached prefill. Cost model: full_input/8333 > (input-cached)/8333 + interference is always true.
Verdict: REJECTED. PS without KV pull cannot beat cached co-located prefill. The cold prefill overhead + KV transfer time exceeds the interference savings.
H3: C_s cached prefill + flexible D decode (V2) improves E2E
Claim: C_s (session-sticky, has cache) does fast prefill (max_tokens=1), D (least-loaded C) pulls KV via Mooncake and does decode. Benefits: (1) C_s prefill is fast due to cache, (2) D is least-loaded so decode starts quickly, (3) session migrates to D for better load balance.
Experiment: V2 — 8C kv_both, HEAVY offloaded (C_s prefill → flexible D decode)
Result:
OK=179/185 (96.8%) TTFT50=0.762 (-29%) E2E50=4.628 (-9%) TPOT90=0.0746 (=)
HEAVY: TTFT50=4.794 (≈baseline) TTFT90=20.4 (+117%)
Routes: 63 HEAVY_OFFLOAD, 51 MEDIUM, 69 WARM
Cache hit on offloaded: mean=3%, median=0% (92% are turn-1 cold)
Prefill: p50=5.0s D KV pull: p50=1.1s p90=6.7s
Partial validation: E2E p50 improved 9%, TTFT p50 improved 29%. But HEAVY p90 degraded 2x and 6 errors (vs 2 baseline).
Key finding: 92% of HEAVY requests are turn-1 (zero cache on C_s). C_s does COLD prefill anyway → offload adds pure RDMA overhead (~1.1s) with no cache benefit.
Verdict: PARTIALLY VALIDATED. The architecture works for MEDIUM and WARM (better load balance). But blindly offloading all HEAVY hurts because most are cold.
H4: Only offload HEAVY with high cache hit (cold HEAVY should stay co-located)
Claim: Turn-1 HEAVY requests have zero cache → co-located is faster (no RDMA overhead). Only turn-2+ HEAVY with significant cache hit (>50%) should be offloaded, because:
- C_s's prefill is fast (only new tokens computed)
- D gets the KV via RDMA (~1.1s, small vs the savings from not waiting for C_s's decode queue)
- C_s's decode is not disrupted
Counterintuition: This challenges the conventional PD-sep assumption that "all heavy prefill should be disaggregated." For agentic workloads with high cache reuse (70%+), most of the "heavy" prefix is already cached — the actual compute is MEDIUM-level.
Experiment: TODO — V2 with cache_hit > 50% * input_length gate
Expected:
- Turn-1 cold HEAVY stays co-located (no RDMA overhead, same TTFT as baseline)
- Turn-2+ cached HEAVY gets offloaded (C_s fast prefill + D least-loaded decode)
- Overall: HEAVY TTFT ≈ baseline, HEAVY TPOT improved (D less loaded), fewer errors
H5: RDMA KV transfer overhead (1.1s p50) is too high — should be pipelined
Claim: The 1.1s p50 KV transfer time for HEAVY requests (~40k tokens) seems excessive. At 200Gbps RDMA (25 GB/s), 40k tokens × 96KB/token = 3.75GB → should take ~0.15s. The 7x gap suggests block-by-block transfer without pipelining.
Questions to investigate:
- Does Mooncake do layerwise KV transfer? (transfer layer N while computing layer N+1)
- Is the 1.1s from RDMA setup overhead, block scatter, or actual bandwidth?
- Does vLLM's chunked prefill interact with the transfer (blocks only available after each chunk)?
From Mooncake code: MooncakeConnector does not do layerwise saving (comment in code). All blocks are saved/loaded after the FULL prefill completes. This means:
- Prefill must complete entirely before ANY KV transfer starts
- D cannot start decode until ALL blocks arrive
- No overlap between prefill compute and KV transfer
Potential optimization: Layerwise transfer would allow D to start pulling layer 0's KV while C_s is still computing layer 47's KV. This could reduce the effective transfer latency to near zero (hidden behind compute).
Experiment: TODO — Profile actual RDMA transfer time vs setup overhead. Check if start_load_kv() and wait_for_layer_load() APIs support layerwise loading (they exist in the interface but Mooncake doesn't implement them).
H6: Session migration breaks KV cache locality for future turns
Claim: When a HEAVY request is offloaded from C_s to D, session affinity moves to D. But D starts with zero cache for this session — it only has the KV from the current turn (transferred via RDMA). Future turns go to D, which now has the current turn cached. But the RDMA-transferred KV might not be properly registered in D's prefix cache.
Questions:
- Does vLLM's prefix cache recognize RDMA-transferred blocks as cacheable?
- If yes, future turns on D should have similar APC to staying on C_s.
- If no, every turn after migration is a cold start on D.
From vLLM metrics: external_prefix_cache_hits_total counts cross-instance cache hits. If this is > 0 on D after migration, the transferred blocks ARE cacheable.
Experiment: TODO — Track per-instance APC before and after session migration. Check if D's APC for migrated sessions matches expectations.
Summary of Current Understanding
Turn 1 (cold) Turn 2+ (cached)
───────────── ────────────────
Co-located: ✅ Best (no overhead) ⚠️ HEAVY disrupts decode
Offload (V2): ❌ Adds RDMA overhead ✅ C_s fast prefill + D load balance
The optimal strategy is hybrid: co-locate cold turn-1, offload cached turn-2+.
This is the key insight for the paper: the offload decision should be cache-aware, not size-based. A 80k-token request with 90% cache hit is effectively a 8k-token prefill — MEDIUM, not HEAVY. The "heaviness" that matters for PD disaggregation is new_tokens_to_compute, not total_input_length.
H7: OVERLOAD_FACTOR tuning improves GPU balance
Claim: Lowering OVERLOAD_FACTOR (from 2.0 to 1.5/1.3/1.0) breaks session affinity earlier, improving GPU utilization balance.
Experiment: 4 baseline runs (no Mooncake) with OF=2.0, 1.5, 1.3, 1.0. 200 req each, fresh restart.
Result:
OF=2.0: imbalance=3.71x TTFT50=1.077 E2E50=5.093
OF=1.5: imbalance=3.45x TTFT50=1.068 E2E50=5.480
OF=1.3: imbalance=3.96x TTFT50=1.073 E2E50=5.144
OF=1.0: imbalance=3.47x TTFT50=1.085 E2E50=5.496
All within noise. APC unchanged (~30%).
Verdict: REJECTED. The imbalance is driven by workload skew (some sessions are inherently heavier), not by sticky routing. The OVERLOAD_FACTOR threshold rarely fires because per-instance load fluctuates too quickly. The hot GPU just rotates to different instances across runs.
Key learning: The root cause of GPU imbalance is at session placement time (turn 1), not at affinity-breaking time (turn 2+). Turn-1 placement uses ongoing_tokens scoring, which is a snapshot that doesn't account for cumulative or future load.
H4 Validated: Cache-gate improves GPU balance but RDMA kills TTFT
Experiment: H4 cache-gate (8C kv_both, offload only when cache_ratio >= 0.3) with GPU profiling.
Result:
Baseline H4 cache-gate
GPU Imbalance: 3.97x 2.04x ← 2x better balance
GPU Std: 14.9% 6.7% ← less variance
GPU Max: 63.3% 35.3% ← no extreme hotspot
HEAVY_COLO TTFT: 7.02s 6.28s ← -10.5% from better balance!
HEAVY_OFFLOAD TTFT: N/A 11.45s ← RDMA penalty
OK/N: 198/200 198/200 ← same reliability
Key finding: The 10.5% HEAVY_COLO improvement proves GPU balance → better latency. But the 7 RDMA-offloaded requests (TTFT=11.45s) pull down the aggregate. RDMA transfer is bimodal: 3/7 fast (0.6-1.2s), 3/7 slow (18-31s).
Current Understanding (updated)
- PD-Sep: net negative (memory wall) ← proven
- LMetric: ≈ baseline for agentic (session affinity limits routing freedom) ← proven
- Elastic P2P (RDMA): net negative on single machine (Mooncake lacks layerwise transfer → RDMA is pure overhead) ← proven
- OVERLOAD_FACTOR tuning: no effect (imbalance from workload skew, not routing) ← proven
- GPU balance improvement → HEAVY TTFT -10.5%: validated (H4 HEAVY_COLO data)
- The bottleneck is at time_scale=20 with 200 req: system is only 30% loaded. Higher load may reveal more optimization opportunities.
H8: Higher concurrency reveals prefill-decode interference
Claim: At 8 sessions / 8 GPUs, the system is underloaded (30% GPU util). Increasing to 16 sessions should reveal prefill-decode interference.
Experiments:
- 8 sessions, ts=20, 1000 req: TPOT90=0.073, GPU=30%, imbal=1.5x
- 16 sessions, ts=10, 500 req: TPOT90=0.106, GPU=~25%, imbal=~3.5x
- 32 sessions, ts=10, 500 req: (not run yet)
Result:
8 sessions 16 sessions Delta
TPOT p90: 0.0729 0.1058 +45%!
WARM TPOT90: 0.0640 0.1301 +103%!
MEDIUM TPOT90: 0.0750 0.1970 +149%!
HEAVY TTFT50: (varies) 3.399 —
E2E p50: 4.516 5.830 +29%
Verdict: VALIDATED. 16 sessions creates real prefill-decode interference. MEDIUM TPOT degrades 2.5x because HEAVY prefills (via chunked prefill) block decode steps on the same GPU. This is the scenario where PD disaggregation should theoretically help.
H9: Elastic RDMA offload at 16 sessions reduces interference
Claim: At 16 sessions where interference is severe, elastic V2 (C_s prefill + flexible D decode via RDMA) should reduce TPOT by isolating heavy prefill from decode.
Experiment: 16 sessions, 500 req, elastic (kv_both + H4 cache-gate)
Result:
Baseline 16s Elastic 16s Delta
TPOT p90: 0.1058 0.1231 +16% (WORSE)
MEDIUM TPOT90: 0.1970 0.2056 +4% (same)
TTFT p50: 0.828 0.937 +13% (WORSE)
E2E p50: 5.830 6.528 +12% (WORSE)
OK/N: 498/500 498/500 same
Offloaded: — 13/500 (2.6%) too few to matter
Verdict: REJECTED. Elastic at 16 sessions is WORSE, not better. Root causes:
- Cache-gate correctly blocks 89% of HEAVY (cold turn-1, cache_ratio=0) → only 13 offloads
- kv_both runtime overhead at high concurrency adds ~16% TPOT vs plain baseline
- The 13 offloaded requests have TTFT p50=17.5s (RDMA overhead), much worse than colocated 3.5s
Key learning: The RDMA transfer approach cannot solve prefill-decode interference because:
- Most HEAVY are cold (no cache to benefit from offload)
- Mooncake lacks layerwise transfer (RDMA is pure sequential overhead after prefill)
- kv_both has non-zero overhead at high concurrency (contradicts Phase 0 at low concurrency)
Current Understanding (final)
What DOESN'T work for agentic workloads:
- PD-Sep: net negative — KV cache memory wall on decode instances
- LMetric (OSDI'26): ≈ linear routing — session affinity limits routing freedom
- Elastic P2P RDMA offload: net negative — Mooncake transfer overhead, no layerwise pipeline
- OVERLOAD_FACTOR tuning: no effect — imbalance from workload skew, not routing
- Dedicated Prefill Service (PS): cannot win cost comparison without KV pull, PS is always slower than cached C
- Cache-gate offload (H4): correct but only 10-12% of HEAVY have cache → limited activation
What DOES work:
- Cache-aware session-sticky routing: +24pp APC, -60% TTFT vs round-robin (the dominant optimization)
- GPU balance from offload routing: HEAVY_COLO -10.5% TTFT when imbalance reduced (H4 data)
The real bottleneck:
At production-level concurrency (>1 session/GPU), the dominant bottleneck is chunked prefill interference: large HEAVY prefill chunks block decode steps on the same GPU, causing TPOT to degrade 45-149%.
Neither routing nor RDMA-based PD disaggregation solves this. The root cause is vLLM's scheduler design:
- Chunked prefill chunk size (
max_num_batched_tokens, default 8192) is fixed - Large prefill chunks monopolize the GPU for tens of ms, stalling decode
- Reducing chunk size would improve decode responsiveness but increase prefill overhead
Next direction: Adaptive chunked prefill scheduling
Instead of fixed chunk size, dynamically adjust based on decode pressure:
- When decode queue is deep: smaller chunks → more decode slots → better TPOT
- When decode queue is empty: larger chunks → faster prefill → better TTFT
- This is a vLLM scheduler modification, not a routing change